recipe bioconductor-joda

JODA algorithm for quantifying gene deregulation using knowledge



GPL (>= 2)



Package ‘joda’ implements three steps of an algorithm called JODA. The algorithm computes gene deregulation scores. For each gene, its deregulation score reflects how strongly an effect of a certain regulator’s perturbation on this gene differs between two different cell populations. The algorithm utilizes regulator knockdown expression data as well as knowledge about signaling pathways in which the regulators are involved (formalized in a simple matrix model).

package bioconductor-joda

(downloads) docker_bioconductor-joda


1.34.0-0, 1.32.0-1, 1.30.0-0

Required By


With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-joda

and update with:

conda update bioconductor-joda

or use the docker container:

docker pull<tag>

(see bioconductor-joda/tags for valid values for <tag>)