recipe bioconductor-lowmaca

LowMACA - Low frequency Mutation Analysis via Consensus Alignment

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/LowMACA.html

License:

GPL-3

Recipe:

/bioconductor-lowmaca/meta.yaml

The LowMACA package is a simple suite of tools to investigate and analyze the mutation profile of several proteins or pfam domains via consensus alignment. You can conduct an hypothesis driven exploratory analysis using our package simply providing a set of genes or pfam domains of your interest.

package bioconductor-lowmaca

Versions:

1.28.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.1-0,  1.12.0-0

Depends:

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-cbioportaldata >=2.10.0,<2.11.0

• bioconductor-lowmacaannotation >=0.99.0,<0.100.0

• bioconductor-motifstack >=1.42.0,<1.43.0

• clustalo

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-gridbase

• r-httr

• r-plyr

• r-rcolorbrewer

• r-reshape2

• r-stringr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-lowmaca

and update with:

conda update bioconductor-lowmaca

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-lowmaca:<tag>

(see bioconductor-lowmaca/tags for valid values for <tag>)

Download stats

Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-lowmaca/README.html)