recipe bioconductor-mapkl

A Hybrid Feature Selection method for gene expression data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/mAPKL.html

License

GPL (>= 2)

Recipe

/bioconductor-mapkl/meta.yaml

We propose a hybrid FS method (mAP-KL), which combines multiple hypothesis testing and affinity propagation (AP)-clustering algorithm along with the Krzanowski & Lai cluster quality index, to select a small yet informative subset of genes.

package bioconductor-mapkl

Versions

1.18.0-0,  1.16.0-0,  1.14.1-0,  1.12.0-0

Depends

• bioconductor-annotationdbi >=1.50.0,<1.51.0

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-limma >=3.44.0,<3.45.0

• bioconductor-multtest >=2.44.0,<2.45.0

• bioconductor-reactome.db >=1.70.0,<1.71.0

• r-apcluster

• r-base >=4.0,<4.1.0a0

• r-clustersim

• r-e1071

• r-igraph

• r-parmigene

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-mapkl

and update with:

conda update bioconductor-mapkl

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mapkl:<tag>

(see bioconductor-mapkl/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-mapkl/README.html)