recipe bioconductor-mapkl

A Hybrid Feature Selection method for gene expression data

Homepage

https://bioconductor.org/packages/3.14/bioc/html/mAPKL.html

License

GPL (>= 2)

Recipe

/bioconductor-mapkl/meta.yaml

We propose a hybrid FS method (mAP-KL), which combines multiple hypothesis testing and affinity propagation (AP)-clustering algorithm along with the Krzanowski & Lai cluster quality index, to select a small yet informative subset of genes.

package bioconductor-mapkl

Versions

1.24.0-0,  1.22.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.1-0,  1.12.0-0

Depends

• bioconductor-annotationdbi >=1.56.0,<1.57.0

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-limma >=3.50.0,<3.51.0

• bioconductor-multtest >=2.50.0,<2.51.0

• bioconductor-reactome.db >=1.77.0,<1.78.0

• r-apcluster

• r-base >=4.1,<4.2.0a0

• r-clustersim

• r-e1071

• r-igraph

• r-parmigene

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-mapkl

and update with:

conda update bioconductor-mapkl

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mapkl:<tag>

(see bioconductor-mapkl/tags for valid values for <tag>)

Download stats

Link to this page

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