recipe bioconductor-methcp

Differential methylation anlsysis for bisulfite sequencing data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/MethCP.html

License:

Artistic-2.0

Recipe:

/bioconductor-methcp/meta.yaml

MethCP is a differentially methylated region (DMR) detecting method for whole-genome bisulfite sequencing (WGBS) data, which is applicable for a wide range of experimental designs beyond the two-group comparisons, such as time-course data. MethCP identifies DMRs based on change point detection, which naturally segments the genome and provides region-level differential analysis.

package bioconductor-methcp

Versions:

1.11.0-0,  1.7.0-0,  1.6.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-bsseq >=1.34.0,<1.35.0

• bioconductor-dnacopy >=1.72.0,<1.73.0

• bioconductor-dss >=2.46.0,<2.47.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-methylkit >=1.24.0,<1.25.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-methcp

and update with:

conda update bioconductor-methcp

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-methcp:<tag>

(see bioconductor-methcp/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-methcp/README.html)