recipe bioconductor-methcp

Differential methylation anlsysis for bisulfite sequencing data

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/MethCP.html

License:

Artistic-2.0

Recipe:

/bioconductor-methcp/meta.yaml

MethCP is a differentially methylated region (DMR) detecting method for whole-genome bisulfite sequencing (WGBS) data, which is applicable for a wide range of experimental designs beyond the two-group comparisons, such as time-course data. MethCP identifies DMRs based on change point detection, which naturally segments the genome and provides region-level differential analysis.

package bioconductor-methcp

(downloads) docker_bioconductor-methcp

Versions:

1.7.0-01.6.0-01.4.0-11.4.0-01.2.0-01.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-methcp

and update with:

conda update bioconductor-methcp

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-methcp:<tag>

(see bioconductor-methcp/tags for valid values for <tag>)

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