-
recipe
bioconductor-methyanalysis¶ DNA methylation data analysis and visualization
- Homepage
https://bioconductor.org/packages/3.10/bioc/html/methyAnalysis.html
- License
Artistic-2.0
- Recipe
- Links
biotools: methyanalysis, doi: 10.1038/nmeth.3252
The methyAnalysis package aims for the DNA methylation data analysis and visualization. A MethyGenoSet class is defined to keep the chromosome location information together with the data. The package also includes functions of estimating the methylation levels from Methy-Seq data.
-
package
bioconductor-methyanalysis¶ 
- Versions
1.28.0-0, 1.26.0-1, 1.24.0-0, 1.22.0-0, 1.20.0-0
- Depends
bioconductor-annotate >=1.64.0,<1.65.0
bioconductor-annotationdbi >=1.48.0,<1.49.0
bioconductor-biobase >=2.46.0,<2.47.0
bioconductor-biocgenerics >=0.32.0,<0.33.0
bioconductor-biomart >=2.42.0,<2.43.0
bioconductor-genefilter >=1.68.0,<1.69.0
bioconductor-genomeinfodb >=1.22.0,<1.23.0
bioconductor-genomicfeatures >=1.38.0,<1.39.0
bioconductor-genomicranges >=1.38.0,<1.39.0
bioconductor-genoset >=1.42.0,<1.43.0
bioconductor-gviz >=1.30.0,<1.31.0
bioconductor-iranges >=2.20.0,<2.21.0
bioconductor-lumi >=2.38.0,<2.39.0
bioconductor-methylumi >=2.32.0,<2.33.0
bioconductor-org.hs.eg.db >=3.10.0,<3.11.0
bioconductor-rtracklayer >=1.46.0,<1.47.0
bioconductor-summarizedexperiment >=1.16.0,<1.17.0
bioconductor-variantannotation >=1.32.0,<1.33.0
r-base >=3.6,<3.7.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-methyanalysis
and update with:
conda update bioconductor-methyanalysis
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-methyanalysis:<tag>
(see bioconductor-methyanalysis/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-methyanalysis/README.html)