-
recipe
bioconductor-methyanalysis¶ DNA methylation data analysis and visualization
- Homepage
https://bioconductor.org/packages/3.11/bioc/html/methyAnalysis.html
- License
Artistic-2.0
- Recipe
- Links
biotools: methyanalysis, doi: 10.1038/nmeth.3252
The methyAnalysis package aims for the DNA methylation data analysis and visualization. A MethyGenoSet class is defined to keep the chromosome location information together with the data. The package also includes functions of estimating the methylation levels from Methy-Seq data.
-
package
bioconductor-methyanalysis¶ 
- Versions
1.30.0-0, 1.28.0-0, 1.26.0-1, 1.24.0-0, 1.22.0-0, 1.20.0-0
- Depends
bioconductor-annotate >=1.66.0,<1.67.0
bioconductor-annotationdbi >=1.50.0,<1.51.0
bioconductor-biobase >=2.48.0,<2.49.0
bioconductor-biocgenerics >=0.34.0,<0.35.0
bioconductor-biomart >=2.44.0,<2.45.0
bioconductor-genefilter >=1.70.0,<1.71.0
bioconductor-genomeinfodb >=1.24.0,<1.25.0
bioconductor-genomicfeatures >=1.40.0,<1.41.0
bioconductor-genomicranges >=1.40.0,<1.41.0
bioconductor-genoset >=1.44.0,<1.45.0
bioconductor-gviz >=1.32.0,<1.33.0
bioconductor-iranges >=2.22.0,<2.23.0
bioconductor-lumi >=2.40.0,<2.41.0
bioconductor-methylumi >=2.34.0,<2.35.0
bioconductor-org.hs.eg.db >=3.11.0,<3.12.0
bioconductor-rtracklayer >=1.48.0,<1.49.0
bioconductor-summarizedexperiment >=1.18.0,<1.19.0
bioconductor-variantannotation >=1.34.0,<1.35.0
r-base >=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-methyanalysis
and update with:
conda update bioconductor-methyanalysis
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-methyanalysis:<tag>
(see bioconductor-methyanalysis/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-methyanalysis/README.html)