recipe bioconductor-methyanalysis

DNA methylation data analysis and visualization

Homepage

https://bioconductor.org/packages/3.11/bioc/html/methyAnalysis.html

License

Artistic-2.0

Recipe

/bioconductor-methyanalysis/meta.yaml

Links

biotools: methyanalysis, doi: 10.1038/nmeth.3252

The methyAnalysis package aims for the DNA methylation data analysis and visualization. A MethyGenoSet class is defined to keep the chromosome location information together with the data. The package also includes functions of estimating the methylation levels from Methy-Seq data.

package bioconductor-methyanalysis

Versions

1.30.0-0,  1.28.0-0,  1.26.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0

Depends

• bioconductor-annotate >=1.66.0,<1.67.0

• bioconductor-annotationdbi >=1.50.0,<1.51.0

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-biomart >=2.44.0,<2.45.0

• bioconductor-genefilter >=1.70.0,<1.71.0

• bioconductor-genomeinfodb >=1.24.0,<1.25.0

• bioconductor-genomicfeatures >=1.40.0,<1.41.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-genoset >=1.44.0,<1.45.0

• bioconductor-gviz >=1.32.0,<1.33.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-lumi >=2.40.0,<2.41.0

• bioconductor-methylumi >=2.34.0,<2.35.0

• bioconductor-org.hs.eg.db >=3.11.0,<3.12.0

• bioconductor-rtracklayer >=1.48.0,<1.49.0

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• bioconductor-variantannotation >=1.34.0,<1.35.0

• r-base >=4.0,<4.1.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-methyanalysis

and update with:

conda update bioconductor-methyanalysis

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-methyanalysis:<tag>

(see bioconductor-methyanalysis/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-methyanalysis/README.html)