-
recipe
bioconductor-methyanalysis
DNA methylation data analysis and visualization
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/methyAnalysis.html
- License
Artistic-2.0
- Recipe
- Links
biotools: methyanalysis, doi: 10.1038/nmeth.3252
The methyAnalysis package aims for the DNA methylation data analysis and visualization. A MethyGenoSet class is defined to keep the chromosome location information together with the data. The package also includes functions of estimating the methylation levels from Methy-Seq data.
-
package
bioconductor-methyanalysis
¶ -
- Versions
1.32.0-0
,1.30.0-0
,1.28.0-0
,1.26.0-1
,1.24.0-0
,1.22.0-0
,1.20.0-0
- Depends
bioconductor-annotate
>=1.68.0,<1.69.0
bioconductor-annotationdbi
>=1.52.0,<1.53.0
bioconductor-bigmemoryextras
>=1.38.0,<1.39.0
bioconductor-biobase
>=2.50.0,<2.51.0
bioconductor-biocgenerics
>=0.36.0,<0.37.0
bioconductor-biomart
>=2.46.0,<2.47.0
bioconductor-genefilter
>=1.72.0,<1.73.0
bioconductor-genomeinfodb
>=1.26.0,<1.27.0
bioconductor-genomicfeatures
>=1.42.0,<1.43.0
bioconductor-genomicranges
>=1.42.0,<1.43.0
bioconductor-genoset
>=1.45.0,<1.46.0
bioconductor-gviz
>=1.34.0,<1.35.0
bioconductor-iranges
>=2.24.0,<2.25.0
bioconductor-lumi
>=2.42.0,<2.43.0
bioconductor-methylumi
>=2.36.0,<2.37.0
bioconductor-org.hs.eg.db
>=3.12.0,<3.13.0
bioconductor-rtracklayer
>=1.50.0,<1.51.0
bioconductor-summarizedexperiment
>=1.20.0,<1.21.0
bioconductor-variantannotation
>=1.36.0,<1.37.0
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-methyanalysis
and update with:
conda update bioconductor-methyanalysis
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-methyanalysis:<tag>
(see bioconductor-methyanalysis/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-methyanalysis/README.html)