-
recipe
bioconductor-methyanalysis¶ The methyAnalysis package aims for the DNA methylation data analysis and visualization. A MethyGenoSet class is defined to keep the chromosome location information together with the data. The package also includes functions of estimating the methylation levels from Methy-Seq data.
- Homepage
https://bioconductor.org/packages/3.9/bioc/html/methyAnalysis.html
- License
Artistic-2.0
- Recipe
- Links
biotools: methyanalysis, doi: 10.1038/nmeth.3252
-
package
bioconductor-methyanalysis¶ 
- Versions
1.24.0-0, 1.22.0-0, 1.20.0-0
- Depends
bioconductor-annotate >=1.60.0,<1.61.0
bioconductor-annotationdbi >=1.44.0,<1.45.0
bioconductor-biobase >=2.42.0,<2.43.0
bioconductor-biocgenerics >=0.28.0,<0.29.0
bioconductor-biomart >=2.38.0,<2.39.0
bioconductor-genefilter >=1.64.0,<1.65.0
bioconductor-genomeinfodb >=1.18.0,<1.19.0
bioconductor-genomicfeatures >=1.34.0,<1.35.0
bioconductor-genomicranges >=1.34.0,<1.35.0
bioconductor-genoset >=1.38.0,<1.39.0
bioconductor-gviz >=1.26.0,<1.27.0
bioconductor-iranges >=2.16.0,<2.17.0
bioconductor-lumi >=2.34.0,<2.35.0
bioconductor-methylumi >=2.28.0,<2.29.0
bioconductor-org.hs.eg.db >=3.7.0,<3.8.0
bioconductor-rtracklayer >=1.42.0,<1.43.0
bioconductor-summarizedexperiment >=1.12.0,<1.13.0
bioconductor-variantannotation >=1.28.0,<1.29.0
r-base >=3.5.1,<3.5.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-methyanalysis
and update with:
conda update bioconductor-methyanalysis
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-methyanalysis:<tag>
(see bioconductor-methyanalysis/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-methyanalysis/README.html)