recipe bioconductor-msgfplus

This package contains function to perform peptide identification using the MS-GF+ algorithm. The package contains functionality for building up a parameter set both in code and through a simple GUI, as well as running the algorithm in batches, potentially asynchronously.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/MSGFplus.html

License

GPL (>= 2)

Recipe

/bioconductor-msgfplus/meta.yaml

package bioconductor-msgfplus

Versions

1.18.0-0, 1.16.1-0

Depends

• bioconductor-mzid >=1.22.0,<1.23.0

• bioconductor-protgenerics >=1.16.0,<1.17.0

• openjdk 8.*

• r-base >=3.5.1,<3.5.2.0a0

Required By

• bioconductor-msgfgui

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-msgfplus

and update with:

conda update bioconductor-msgfplus

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-msgfplus:<tag>

(see bioconductor-msgfplus/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-msgfplus/README.html)