recipe bioconductor-netboxr

netboxr

Homepage

https://bioconductor.org/packages/3.14/bioc/html/netboxr.html

License

LGPL-3 + file LICENSE

Recipe

/bioconductor-netboxr/meta.yaml

NetBox is a network-based approach that combines prior knowledge with a network clustering algorithm. The algorithm allows for the identification of functional modules and allows for combining multiple data types, such as mutations and copy number alterations. NetBox performs network analysis on human interaction networks, and comes pre-loaded with a Human Interaction Network (HIN) derived from four literature curated data sources, including the Human Protein Reference Database (HPRD), Reactome, NCI-Nature Pathway Interaction (PID) Database, and the MSKCC Cancer Cell Map.

package bioconductor-netboxr

Versions

1.6.0-0,  1.4.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-0

Depends

• bioconductor-clusterprofiler >=4.2.0,<4.3.0

• r-base >=4.1,<4.2.0a0

• r-data.table

• r-dt

• r-gplots

• r-igraph >=1.2.4.1

• r-jsonlite

• r-plyr

• r-rcolorbrewer

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-netboxr

and update with:

conda update bioconductor-netboxr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-netboxr:<tag>

(see bioconductor-netboxr/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-netboxr/README.html)