recipe bioconductor-netboxr

netboxr

Homepage

https://bioconductor.org/packages/3.11/bioc/html/netboxr.html

License

LGPL-3 + file LICENSE

Recipe

/bioconductor-netboxr/meta.yaml

NetBox is a software tool for performing network analysis on human interaction networks. It is pre-loaded with a Human Interaction Network (HIN) derived from four literature curated data sources, including the Human Protein Reference Database (HPRD), Reactome, NCI-Nature Pathway Interaction (PID) Database, and the MSKCC Cancer Cell Map.

package bioconductor-netboxr

Versions

1.0.0-0

Depends

• bioconductor-clusterprofiler >=3.16.0,<3.17.0

• r-base >=4.0,<4.1.0a0

• r-data.table

• r-dt

• r-gplots

• r-igraph >=1.2.4.1

• r-jsonlite

• r-plyr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-netboxr

and update with:

conda update bioconductor-netboxr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-netboxr:<tag>

(see bioconductor-netboxr/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-netboxr/README.html)