recipe bioconductor-panvizgenerator

Generate PanViz visualisations from your pangenome

Homepage

https://bioconductor.org/packages/3.13/bioc/html/PanVizGenerator.html

License

GPL (>= 2)

Recipe

/bioconductor-panvizgenerator/meta.yaml

PanViz is a JavaScript based visualisation tool for functionaly annotated pangenomes. PanVizGenerator is a companion for PanViz that facilitates the necessary data preprocessing step necessary to create a working PanViz visualization. The output is fully self-contained so the recipient of the visualization does not need R or PanVizGenerator installed.

package bioconductor-panvizgenerator

Versions

1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.0-0

Depends

• bioconductor-findmyfriends >=1.22.0,<1.23.0

• bioconductor-pcamethods >=1.84.0,<1.85.0

• r-base >=4.1,<4.2.0a0

• r-igraph

• r-jsonlite

• r-shiny

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-panvizgenerator

and update with:

conda update bioconductor-panvizgenerator

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-panvizgenerator:<tag>

(see bioconductor-panvizgenerator/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-panvizgenerator/README.html)