recipe bioconductor-papi

The Pathway Activity Profiling - PAPi - is an R package for predicting the activity of metabolic pathways based solely on a metabolomics data set containing a list of metabolites identified and their respective abundances in different biological samples. PAPi generates hypothesis that improves the final biological interpretation. See Aggio, R.B.M; Ruggiero, K. and Villas-Boas, S.G. (2010) - Pathway Activity Profiling (PAPi): from metabolite profile to metabolic pathway activity. Bioinformatics.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/PAPi.html

License

GPL(>= 2)

Recipe

/bioconductor-papi/meta.yaml

Links

biotools: papi, doi: 10.1093/bioinformatics/btq567

package bioconductor-papi

(downloads) docker_bioconductor-papi

Versions

1.22.0-0, 1.20.0-0, 1.18.0-0, 1.16.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-papi

and update with:

conda update bioconductor-papi

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-papi:<tag>

(see bioconductor-papi/tags for valid values for <tag>)