recipe bioconductor-papi

The Pathway Activity Profiling - PAPi - is an R package for predicting the activity of metabolic pathways based solely on a metabolomics data set containing a list of metabolites identified and their respective abundances in different biological samples. PAPi generates hypothesis that improves the final biological interpretation. See Aggio, R.B.M; Ruggiero, K. and Villas-Boas, S.G. (2010) - Pathway Activity Profiling (PAPi): from metabolite profile to metabolic pathway activity. Bioinformatics.

License:GPL(>= 2)
Links:biotools: papi, doi: 10.1093/bioinformatics/btq567
package bioconductor-papi

(downloads) docker_bioconductor-papi


1.22.0-0, 1.20.0-0, 1.18.0-0, 1.16.0-0

Required By:


With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-papi

and update with:

conda update bioconductor-papi

or use the docker container:

docker pull<tag>

(see bioconductor-papi/tags for valid values for <tag>)