recipe bioconductor-pkgdeptools

This package provides tools for computing and analyzing dependency relationships among R packages. It provides tools for building a graph-based representation of the dependencies among all packages in a list of CRAN-style package repositories. There are also utilities for computing installation order of a given package. If the RCurl package is available, an estimate of the download size required to install a given package and its dependencies can be obtained.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/pkgDepTools.html

License

GPL-2

Recipe

/bioconductor-pkgdeptools/meta.yaml

Links

biotools: pkgdeptools, doi: 10.1038/nmeth.3252

package bioconductor-pkgdeptools

(downloads) docker_bioconductor-pkgdeptools

Versions

1.48.0-0, 1.46.0-0, 1.44.0-0, 1.42.0-0

Depends bioconductor-graph

>=1.60.0,<1.61.0

Depends bioconductor-rbgl

>=1.58.0,<1.59.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-pkgdeptools

and update with:

conda update bioconductor-pkgdeptools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-pkgdeptools:<tag>

(see bioconductor-pkgdeptools/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-pkgdeptools/README.html)