recipe bioconductor-plethy

R framework for exploration and analysis of respirometry data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/plethy.html

License

GPL-3

Recipe

/bioconductor-plethy/meta.yaml

Links

biotools: plethy, doi: 10.1186/s12859-015-0547-7

This package provides the infrastructure and tools to import, query and perform basic analysis of whole body plethysmography and metabolism data. Currently support is limited to data derived from Buxco respirometry instruments as exported by their FinePointe software.

package bioconductor-plethy

Versions

1.26.0-0,  1.24.0-0,  1.22.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bioconductor-streamer >=1.34.0,<1.35.0

• r-base >=4.0,<4.1.0a0

• r-dbi >=0.5-1

• r-ggplot2

• r-plyr

• r-rcolorbrewer

• r-reshape2

• r-rsqlite >=1.1

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-plethy

and update with:

conda update bioconductor-plethy

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-plethy:<tag>

(see bioconductor-plethy/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-plethy/README.html)