recipe bioconductor-probatch

Tools for Diagnostics and Corrections of Batch Effects in Proteomics

Homepage

https://bioconductor.org/packages/3.10/bioc/html/proBatch.html

License

GPL-3

Recipe

/bioconductor-probatch/meta.yaml

These tools facilitate batch effects analysis and correction in high-throughput experiments. It was developed primarily for mass-spectrometry proteomics (DIA/SWATH), but could also be applicable to most omic data with minor adaptations. The package contains functions for diagnostics (proteome/genome-wide and feature-level), correction (normalization and batch effects correction) and quality control. Non-linear fitting based approaches were also included to deal with complex, mass spectrometry-specific signal drifts.

package bioconductor-probatch

(downloads) docker_bioconductor-probatch

Versions

1.2.0-0, 1.0.0-1

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-probatch

and update with:

conda update bioconductor-probatch

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-probatch:<tag>

(see bioconductor-probatch/tags for valid values for <tag>)