recipe bioconductor-proteomicsannotationhubdata

These recipes convert a variety and a growing number of public proteomics data sets into easily-used standard Bioconductor data structures.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/ProteomicsAnnotationHubData.html

License

Artistic-2.0

Recipe

/bioconductor-proteomicsannotationhubdata/meta.yaml

Links

biotools: proteomicsannotationhubdata, doi: 10.1038/nmeth.3252

package bioconductor-proteomicsannotationhubdata

(downloads) docker_bioconductor-proteomicsannotationhubdata

Versions

1.12.0-0, 1.8.0-0

Depends bioconductor-annotationhub

>=2.14.0,<2.15.0

Depends bioconductor-annotationhubdata

>=1.12.0,<1.13.0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-biostrings

>=2.50.0,<2.51.0

Depends bioconductor-genomeinfodb

>=1.18.0,<1.19.0

Depends bioconductor-msnbase

>=2.8.0,<2.9.0

Depends bioconductor-mzr

>=2.16.0,<2.17.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-biocmanager

Depends r-rcurl

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-proteomicsannotationhubdata

and update with:

conda update bioconductor-proteomicsannotationhubdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-proteomicsannotationhubdata:<tag>

(see bioconductor-proteomicsannotationhubdata/tags for valid values for <tag>)