recipe bioconductor-qrqc

Quick Read Quality Control

Homepage

https://bioconductor.org/packages/3.10/bioc/html/qrqc.html

License

GPL (>=2)

Recipe

/bioconductor-qrqc/meta.yaml

Links

biotools: qrqc, doi: 10.1038/nmeth.3252

Quickly scans reads and gathers statistics on base and quality frequencies, read length, k-mers by position, and frequent sequences. Produces graphical output of statistics for use in quality control pipelines, and an optional HTML quality report. S4 SequenceSummary objects allow specific tests and functionality to be written around the data collected.

package bioconductor-qrqc

(downloads) docker_bioconductor-qrqc

Versions

1.40.0-0, 1.38.0-1, 1.36.0-0, 1.34.0-0, 1.32.0-0, 1.30.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-qrqc

and update with:

conda update bioconductor-qrqc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-qrqc:<tag>

(see bioconductor-qrqc/tags for valid values for <tag>)