recipe bioconductor-ramigo

R interface sending requests to AmiGO visualize, retrieving DAG GO trees, parsing GraphViz DOT format files and exporting GML files for Cytoscape. Deprecated:Also uses RCytoscape to interactively display AmiGO trees in Cytoscape.

Homepage

http://bioconductor.org/packages/3.7/bioc/html/RamiGO.html

License

Artistic-2.0

Recipe

/bioconductor-ramigo/meta.yaml

Links

biotools: ramigo

package bioconductor-ramigo

(downloads) docker_bioconductor-ramigo

Versions

1.28.0-0, 1.23.0-0, 1.22.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ramigo

and update with:

conda update bioconductor-ramigo

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ramigo:<tag>

(see bioconductor-ramigo/tags for valid values for <tag>)