recipe bioconductor-rnaseqmap

The rnaSeqMap library provides classes and functions to analyze the RNA-sequencing data using the coverage profiles in multiple samples at a time

Homepage

https://bioconductor.org/packages/3.9/bioc/html/rnaSeqMap.html

License

GPL-2

Recipe

/bioconductor-rnaseqmap/meta.yaml

Links

biotools: rnaseqmap, doi: 10.1186/1471-2105-12-200

package bioconductor-rnaseqmap

(downloads) docker_bioconductor-rnaseqmap

Versions

2.40.0-0, 2.38.0-0, 2.36.0-0, 2.34.0-0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-deseq

>=1.34.0,<1.35.0

Depends bioconductor-edger

>=3.24.0,<3.25.0

Depends bioconductor-genomicalignments

>=1.18.0,<1.19.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-rsamtools

>=1.34.0,<1.35.0

Depends libgcc-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-dbi

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rnaseqmap

and update with:

conda update bioconductor-rnaseqmap

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rnaseqmap:<tag>

(see bioconductor-rnaseqmap/tags for valid values for <tag>)