recipe bioconductor-rnaseqr

RNASeqR: an R package for automated two-group RNA-Seq analysis workflow

Homepage

https://bioconductor.org/packages/3.11/bioc/html/RNASeqR.html

License

Artistic-2.0

Recipe

/bioconductor-rnaseqr/meta.yaml

This R package is designed for case-control RNA-Seq analysis (two-group). There are six steps: "RNASeqRParam S4 Object Creation", "Environment Setup", "Quality Assessment", "Reads Alignment & Quantification", "Gene-level Differential Analyses" and "Functional Analyses". Each step corresponds to a function in this package. After running functions in order, a basic RNASeq analysis would be done easily.

package bioconductor-rnaseqr

(downloads) docker_bioconductor-rnaseqr

Versions

1.6.0-01.4.0-11.2.1-01.0.3-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rnaseqr

and update with:

conda update bioconductor-rnaseqr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rnaseqr:<tag>

(see bioconductor-rnaseqr/tags for valid values for <tag>)