recipe bioconductor-rpsixml

R interface to PSI-MI 2.5 files

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/RpsiXML.html

License:

LGPL-3

Recipe:

/bioconductor-rpsixml/meta.yaml

Links:

biotools: rpsixml, doi: 10.1007/978-1-60761-987-1_9

Queries, data structure and interface to visualization of interaction datasets. This package inplements the PSI-MI 2.5 standard and supports up to now 8 databases. Further databases supporting PSI-MI 2.5 standard will be added continuously.

package bioconductor-rpsixml

Versions:

2.36.0-0,  2.34.0-0,  2.32.0-1,  2.32.0-0,  2.30.0-0,  2.28.0-0,  2.26.0-1,  2.24.0-0,  2.22.0-0, 

2.36.0-0,  2.34.0-0,  2.32.0-1,  2.32.0-0,  2.30.0-0,  2.28.0-0,  2.26.0-1,  2.24.0-0,  2.22.0-0,  2.20.0-0

Depends:

• bioconductor-annotate >=1.72.0,<1.73.0

• bioconductor-annotationdbi >=1.56.0,<1.57.0

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-graph >=1.72.0,<1.73.0

• bioconductor-hypergraph >=1.66.0,<1.67.0

• bioconductor-rbgl >=1.70.0,<1.71.0

• r-base >=4.1,<4.2.0a0

• r-xml >=2.4.0

Required By:

• bioconductor-scisi

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-rpsixml

and update with:

conda update bioconductor-rpsixml

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rpsixml:<tag>

(see bioconductor-rpsixml/tags for valid values for <tag>)

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