recipe bioconductor-rtandem

This package interfaces the tandem protein identification algorithm in R. Identification can be launched in the X!Tandem style, by using as sole parameter the path to a parameter file. But rTANDEM aslo provides extended syntax and functions to streamline launching analyses, as well as function to convert results, parameters and taxonomy to/from R. A related package, shinyTANDEM, provides visualization interface for result objects.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/rTANDEM.html

License

Artistic-1.0 | file LICENSE

Recipe

/bioconductor-rtandem/meta.yaml

package bioconductor-rtandem

(downloads) docker_bioconductor-rtandem

Versions

1.24.0-2, 1.24.0-1, 1.24.0-0, 1.22.1-0, 1.22.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rtandem

and update with:

conda update bioconductor-rtandem

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rtandem:<tag>

(see bioconductor-rtandem/tags for valid values for <tag>)