recipe bioconductor-slinky

Putting the fun in LINCS L1000 data analysis

Homepage

https://bioconductor.org/packages/3.12/bioc/html/slinky.html

License

MIT + file LICENSE

Recipe

/bioconductor-slinky/meta.yaml

Wrappers to query the L1000 metadata available via the clue.io REST API as well as helpers for dealing with LINCS gctx files, extracting data sets of interest, converting to SummarizedExperiment objects, and some facilities for performing streamlined differential expression analysis of these data sets.

package bioconductor-slinky

Versions

1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.0.0-0

Depends

• bioconductor-rhdf5 >=2.34.0,<2.35.0

• bioconductor-summarizedexperiment >=1.20.0,<1.21.0

• r-base >=4.0,<4.1.0a0

• r-curl

• r-dplyr

• r-foreach

• r-httr

• r-jsonlite

• r-readr

• r-tidyr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-slinky

and update with:

conda update bioconductor-slinky

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-slinky:<tag>

(see bioconductor-slinky/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-slinky/README.html)