recipe bioconductor-spotsegmentation

Spot segmentation via model-based clustering and gridding for blocks within microarray slides, as described in Li et al, Robust Model-Based Segmentation of Microarray Images, Technical Report no. 473, Department of Statistics, University of Washington.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/spotSegmentation.html

License

GPL (>= 2)

Recipe

/bioconductor-spotsegmentation/meta.yaml

Links

biotools: spotsegmentation, doi: 10.1093/bioinformatics/bti447

package bioconductor-spotsegmentation

(downloads) docker_bioconductor-spotsegmentation

Versions

1.58.0-1, 1.58.0-0, 1.56.0-0, 1.54.0-0, 1.52.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-spotsegmentation

and update with:

conda update bioconductor-spotsegmentation

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-spotsegmentation:<tag>

(see bioconductor-spotsegmentation/tags for valid values for <tag>)