recipe bioconductor-srgnet

We developed SRGnet to analyze synergistic regulatory mechanisms in transcriptome profiles that act to enhance the overall cell response to combination of mutations, drugs or environmental exposure. This package can be used to identify regulatory modules downstream of synergistic response genes, prioritize synergistic regulatory genes that may be potential intervention targets, and contextualize gene perturbation experiments.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/SRGnet.html

License

GPL-2

Recipe

/bioconductor-srgnet/meta.yaml

package bioconductor-srgnet

(downloads) docker_bioconductor-srgnet

Versions

1.10.0-1, 1.8.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-srgnet

and update with:

conda update bioconductor-srgnet

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-srgnet:<tag>

(see bioconductor-srgnet/tags for valid values for <tag>)