recipe bioconductor-svaplsseq

The package contains functions that are intended for extracting the signatures of latent variation in RNAseq data and using them to perform an improved differential expression analysis for a set of features (genes, transcripts) between two specified biological groups.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/SVAPLSseq.html

License

GPL-3

Recipe

/bioconductor-svaplsseq/meta.yaml

Links

biotools: svaplsseq, doi: 10.1101/062125

package bioconductor-svaplsseq

(downloads) docker_bioconductor-svaplsseq

Versions

1.8.1-0, 1.8.0-0, 1.6.0-0, 1.4.0-0

Depends bioconductor-edger

>=3.24.0,<3.25.0

Depends bioconductor-limma

>=3.38.0,<3.39.0

Depends bioconductor-summarizedexperiment

>=1.12.0,<1.13.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-ggplot2

Depends r-lmtest

Depends r-pls

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-svaplsseq

and update with:

conda update bioconductor-svaplsseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-svaplsseq:<tag>

(see bioconductor-svaplsseq/tags for valid values for <tag>)