recipe bioconductor-swimr

SwimR is an R-based suite that calculates, analyses, and plots the frequency of C. elegans swimming behavior over time. It places a particular emphasis on identifying paralysis and quantifying the kinetic elements of paralysis during swimming. Data is input to SwipR from a custom built program that fits a 5 point morphometric spine to videos of single worms swimming in a buffer called Worm Tracker.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/SwimR.html

License

LGPL-2

Recipe

/bioconductor-swimr/meta.yaml

Links

biotools: swimr, doi: 10.1016/j.jneumeth.2014.04.024

package bioconductor-swimr

(downloads) docker_bioconductor-swimr

Versions

1.22.0-1, 1.22.0-0, 1.20.0-0, 1.18.0-0, 1.16.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-swimr

and update with:

conda update bioconductor-swimr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-swimr:<tag>

(see bioconductor-swimr/tags for valid values for <tag>)