recipe bioconductor-tarseqqc

TARgeted SEQuencing Experiment Quality Control

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/TarSeqQC.html

License:

GPL (>=2)

Recipe:

/bioconductor-tarseqqc/meta.yaml

Links:

biotools: tarseqqc

The package allows the representation of targeted experiment in R. This is based on current packages and incorporates functions to do a quality control over this kind of experiments and a fast exploration of the sequenced regions. An xlsx file is generated as output.

package bioconductor-tarseqqc

Versions:

1.27.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.12.0-0, 

1.27.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.2-0,  1.6.1-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicalignments >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

• r-cowplot

• r-ggplot2

• r-hmisc

• r-openxlsx

• r-plyr

• r-reshape2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-tarseqqc

and update with:

conda update bioconductor-tarseqqc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tarseqqc:<tag>

(see bioconductor-tarseqqc/tags for valid values for <tag>)

Download stats

Link to this page

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