recipe bioconductor-tcgabiolinksgui

“TCGAbiolinksGUI: A Graphical User Interface to analyze cancer molecular and clinical data. A demo version of GUI is found in https://tcgabiolinksgui.shinyapps.io/tcgabiolinks/”

Homepage

https://bioconductor.org/packages/3.8/bioc/html/TCGAbiolinksGUI.html

License

GPL (>= 3)

Recipe

/bioconductor-tcgabiolinksgui/meta.yaml

package bioconductor-tcgabiolinksgui

Versions

1.8.0-0

Depends

• bioconductor-clusterprofiler >=3.10.0,<3.11.0

• bioconductor-elmer >=2.6.0,<2.7.0

• bioconductor-illuminahumanmethylation27kanno.ilmn12.hg19 >=0.6.0,<0.7.0

• bioconductor-illuminahumanmethylation27kmanifest >=0.4.0,<0.5.0

• bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0

• bioconductor-illuminahumanmethylation450kmanifest >=0.4.0,<0.5.0

• bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19 >=0.6.0,<0.7.0

• bioconductor-illuminahumanmethylationepicmanifest >=0.3.0,<0.4.0

• bioconductor-maftools >=1.8.0,<1.9.0

• bioconductor-minfi >=1.28.0,<1.29.0

• bioconductor-pathview >=1.22.0,<1.23.0

• bioconductor-summarizedexperiment >=1.12.0,<1.13.0

• bioconductor-tcgabiolinks >=2.10.0,<2.11.0

• bioconductor-tcgabiolinksgui.data >=1.2.0,<1.3.0

• r-base >=3.5.1,<3.5.2.0a0

• r-caret

• r-colourpicker

• r-data.table

• r-downloader >=0.4

• r-dt

• r-ggplot2 >=2.1.0

• r-ggrepel

• r-plotly

• r-readr

• r-shiny >=0.14.1

• r-shinybs >=0.61

• r-shinydashboard >=0.5.3

• r-shinyfiles >=0.6.2

• r-shinyjs >=0.7

• r-stringr >=1.1.0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-tcgabiolinksgui

and update with:

conda update bioconductor-tcgabiolinksgui

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tcgabiolinksgui:<tag>

(see bioconductor-tcgabiolinksgui/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-tcgabiolinksgui/README.html)