recipe bioconductor-topaseq

Implementation of methods for topology-based pathway analysis of RNA-seq data. This includes Topological Analysis of Pathway Phenotype Association (TAPPA; Gao and Wang, 2007), PathWay Enrichment Analysis (PWEA; Hung et al., 2010), and the Pathway Regulation Score (PRS; Ibrahim et al., 2012).

Homepage

https://bioconductor.org/packages/3.9/bioc/html/ToPASeq.html

License

AGPL-3

Recipe

/bioconductor-topaseq/meta.yaml

package bioconductor-topaseq

(downloads) docker_bioconductor-topaseq

Versions

1.16.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-topaseq

and update with:

conda update bioconductor-topaseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-topaseq:<tag>

(see bioconductor-topaseq/tags for valid values for <tag>)