recipe bioconductor-vega

An R package for copy number data segmentation

Homepage

https://bioconductor.org/packages/3.10/bioc/html/Vega.html

License

GPL-2

Recipe

/bioconductor-vega/meta.yaml

Links

biotools: vega, doi: 10.1093/bioinformatics/btq586

Vega (Variational Estimator for Genomic Aberrations) is an algorithm that adapts a very popular variational model (Mumford and Shah) used in image segmentation so that chromosomal aberrant regions can be efficiently detected.

package bioconductor-vega

(downloads) docker_bioconductor-vega

Versions

1.34.0-0, 1.32.0-1, 1.32.0-0, 1.30.0-0, 1.28.0-0, 1.26.0-0, 1.24.0-0

Depends
  • libgcc-ng >=7.3.0

  • r-base >=3.6,<3.7.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-vega

and update with:

conda update bioconductor-vega

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-vega:<tag>

(see bioconductor-vega/tags for valid values for <tag>)