recipe bioconductor-xcir

XCI-inference

Homepage

https://bioconductor.org/packages/3.11/bioc/html/XCIR.html

License

GPL-2

Recipe

/bioconductor-xcir/meta.yaml

Models and tools for subject level analysis of X chromosome inactivation (XCI) and XCI-escape inference.

package bioconductor-xcir

Versions

1.2.0-0, 1.0.0-0

Depends

• bioconductor-biomart >=2.44.0,<2.45.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bioconductor-variantannotation >=1.34.0,<1.35.0

• r-base >=4.0,<4.1.0a0

• r-data.table

• r-ggplot2

• r-readxl

• r-seqminer

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-xcir

and update with:

conda update bioconductor-xcir

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-xcir:<tag>

(see bioconductor-xcir/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-xcir/README.html)