recipe bioconductor-xcir

XCI-inference

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/XCIR.html

License:

GPL-2

Recipe:

/bioconductor-xcir/meta.yaml

Models and tools for subject level analysis of X chromosome inactivation (XCI) and XCI-escape inference.

package bioconductor-xcir

Versions:

1.7.0-0,  1.6.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-biomart >=2.50.0,<2.51.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-variantannotation >=1.40.0,<1.41.0

• r-base >=4.1,<4.2.0a0

• r-data.table

• r-ggplot2

• r-readxl

• r-seqminer

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-xcir

and update with:

conda update bioconductor-xcir

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-xcir:<tag>

(see bioconductor-xcir/tags for valid values for <tag>)

Download stats

Link to this page

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