humann2

downloads

HUMAnN is a pipeline for efficiently and accurately profiling the presence/absence and abundance of microbial pathways in a community from metagenomic or metatranscriptomic sequencing data

Home http://huttenhower.sph.harvard.edu/humann2
Versions 0.11.1, 0.5.0, 0.6.1, 0.9.9
License MIT
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/humann2/0.9.9

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install humann2

and update with:

conda update humann2

docker

A Docker container is available at https://quay.io/repository/biocontainers/humann2.