jellyfish

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Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence

Home http://www.genome.umd.edu/jellyfish.html
Versions 1.1.11, 2.2.3, 2.2.6
License GPLv3
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/jellyfish

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install jellyfish

and update with:

conda update jellyfish

docker

A Docker container is available at https://quay.io/repository/biocontainers/jellyfish.