Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence
|Versions||1.1.11, 2.2.3, 2.2.6|
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install jellyfish
and update with:
conda update jellyfish
A Docker container is available at https://quay.io/repository/biocontainers/jellyfish.