r-bio3d

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Utilities to process, organize and explore protein structure, sequence and dynamics data. Features include the ability to read and write structure, sequence and dynamic trajectory data, perform sequence and structure database searches, data summaries, atom selection, alignment, superposition, rigid core identification, clustering, torsion analysis, distance matrix analysis, structure and sequence conservation analysis, normal mode analysis, principal component analysis of heterogeneous structure data, and correlation network analysis from normal mode and molecular dynamics data. In addition, various utility functions are provided to enable the statistical and graphical power of the R environment to work with biological sequence and structural data. Please refer to the URLs below for more information.

Home http://thegrantlab.org/bio3d/, http://bitbucket.org/Grantlab/bio3d
Versions 2.2_3
License GPL (>= 2)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-bio3d

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-bio3d

and update with:

conda update r-bio3d

docker

A Docker container is available at https://quay.io/repository/biocontainers/r-bio3d.