Analyzes gene expression (time series) data with focus on the inference of gene networks. In particular, GeneNet implements the methods of Schaefer and Strimmer (2005a,b,c) and Opgen-Rhein and Strimmer (2006, 2007) for learning large-scale gene association networks (including assignment of putative directions).
|License||GPL (>= 3)|
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install r-genenet
and update with:
conda update r-genenet
A Docker container is available at https://quay.io/repository/biocontainers/r-genenet.