Package designed to be used with Rscript to write #! shebang scripts that accept short and long flags/options. Many users will prefer using instead the packages optparse or argparse which add extra features like automatically generated help option and usage, support for default values, positional argument support, etc.

Home https://github.com/trevorld/getopt
Versions 1.20.0
License GPL (>= 2)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-getopt


With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-getopt

and update with:

conda update r-getopt


A Docker container is available at https://quay.io/repository/biocontainers/r-getopt.