recipe r-ggrasp

Given a group of genomes and their relationship with each other, the package clusters the genomes and selects the most representative members of each cluster. Additional data can be provided to the prioritize certain genomes. The results can be printed out as a list or a new phylogeny with graphs of the trees and distance distributions also available. For detailed introduction see: Thomas H Clarke, Lauren M Brinkac, Granger Sutton, and Derrick E Fouts (2018), GGRaSP: a R-package for selecting representative genomes using Gaussian mixture models, Bioinformatics, bty300, <doi:10.1093/bioinformatics/bty300>.

Homepage

https://CRAN.R-project.org/package=ggrasp

License

GPL2 / GPL-2

Recipe

/r-ggrasp/meta.yaml

package r-ggrasp

(downloads) docker_r-ggrasp

Versions

1.0-2, 1.0-1, 1.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-ggrasp

and update with:

conda update r-ggrasp

or use the docker container:

docker pull quay.io/biocontainers/r-ggrasp:<tag>

(see r-ggrasp/tags for valid values for <tag>)