A complete analysis pipeline for matrix-assisted laser desorption/ionization-time-of-flight (MALDI-TOF) and other two-dimensional mass spectrometry data. In addition to commonly used plotting and processing methods it includes distinctive features, namely baseline subtraction methods such as morphological filters (TopHat) or the statistics-sensitive non-linear iterative peak-clipping algorithm (SNIP), peak alignment using warping functions, handling of replicated measurements as well as allowing spectra with different resolutions.

Home http://strimmerlab.org/software/maldiquant/ https://github.com/sgibb/MALDIquant/
Versions 1.14, 1.16.4, 1.17
License GPL (>= 3)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-maldiquant


With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-maldiquant

and update with:

conda update r-maldiquant


A Docker container is available at https://quay.io/repository/biocontainers/r-maldiquant.