A complete analysis pipeline for matrix-assisted laser desorption/ionization-time-of-flight (MALDI-TOF) and other two-dimensional mass spectrometry data. In addition to commonly used plotting and processing methods it includes distinctive features, namely baseline subtraction methods such as morphological filters (TopHat) or the statistics-sensitive non-linear iterative peak-clipping algorithm (SNIP), peak alignment using warping functions, handling of replicated measurements as well as allowing spectra with different resolutions.
|License||GPL (>= 3)|
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install r-maldiquant
and update with:
conda update r-maldiquant
A Docker container is available at https://quay.io/repository/biocontainers/r-maldiquant.