recipe r-ngsplot

Quick mining and visualization of NGS data by integrating genomic databases

Homepage

https://github.com/shenlab-sinai/ngsplot

License

GPL-2.0

Recipe

/r-ngsplot/meta.yaml

Links

doi: 10.1186/1471-2164-15-284

package r-ngsplot

Versions

2.63-7,  2.63-6,  2.63-5,  2.63-3,  2.63-2,  2.63-1,  2.63-0

Depends

• bioconductor-bsgenome

• bioconductor-rsamtools

• bioconductor-shortread

• python <3.0a0

• r-base

• r-catools

• r-domc

Required By

• r-ngsplotdb-mm10

• r-ngsplotdb-hg38

• r-ngsplotdb-hg19

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-ngsplot

and update with:

conda update r-ngsplot

or use the docker container:

docker pull quay.io/biocontainers/r-ngsplot:<tag>

(see r-ngsplot/tags for valid values for <tag>)

Download stats

Link to this page

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