r-tfmpvalue

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In putative Transcription Factor Binding Sites (TFBSs) identification from sequence/alignments, we are interested in the significance of certain match score. TFMPvalue provides the accurate calculation of P-value with score threshold for Position Weight Matrices, or the score with given P-value. This package is an interface to code originally made available by Helene Touzet and Jean-Stephane Varre, 2007, Algorithms Mol Biol:2, 15.

Home https://github.com/ge11232002/TFMPvalue
Versions 0.0.6
License GPL-2
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-tfmpvalue

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-tfmpvalue

and update with:

conda update r-tfmpvalue

docker

A Docker container is available at https://quay.io/repository/biocontainers/r-tfmpvalue.