In putative Transcription Factor Binding Sites (TFBSs) identification from sequence/alignments, we are interested in the significance of certain match score. TFMPvalue provides the accurate calculation of P-value with score threshold for Position Weight Matrices, or the score with given P-value. This package is an interface to code originally made available by Helene Touzet and Jean-Stephane Varre, 2007, Algorithms Mol Biol:2, 15.
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install r-tfmpvalue
and update with:
conda update r-tfmpvalue
A Docker container is available at https://quay.io/repository/biocontainers/r-tfmpvalue.