r-vgam

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An implementation of about 6 major classes of statistical regression models. At the heart of it are the vector generalized linear and additive model (VGLM/VGAM) classes, and the book “Vector Generalized Linear and Additive Models: With an Implementation in R” (Yee, 2015) <DOI:10.1007/978-1-4939-2818-7> gives details of the statistical framework and VGAM package. Currently only fixed-effects models are implemented, i.e., no random-effects models. Many (150+) models and distributions are estimated by maximum likelihood estimation (MLE) or penalized MLE, using Fisher scoring. VGLMs can be loosely thought of as multivariate GLMs. VGAMs are data-driven VGLMs (i.e., with smoothing). The other classes are RR-VGLMs (reduced-rank VGLMs), quadratic RR-VGLMs, reduced-rank VGAMs, RCIMs (row-column interaction models)—these classes perform constrained and unconstrained quadratic ordination (CQO/UQO) models in ecology, as well as constrained additive ordination (CAO). Note that these functions are subject to change; see the NEWS and ChangeLog files for latest changes.

Home https://www.stat.auckland.ac.nz/~yee/VGAM
Versions 1.0_2
License GPL-2 | GPL-3
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-vgam

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-vgam

and update with:

conda update r-vgam

docker

A Docker container is available at https://quay.io/repository/biocontainers/r-vgam.