r-xnomial

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Tests whether a set of counts fit a given expected ratio. For example, a genetic cross might be expected to produce four types in the relative frequencies of 9:3:3:1. To see whether a set of observed counts fits this expectation, one can examine all possible outcomes with xmulti() or a random sample of them with xmonte() and find the probability of an observation deviating from the expectation by at least as much as the observed. As a measure of deviation from the expected, one can use the log-likelihood ratio, the multinomial probability, or the classic chi-square statistic. A histogram of the test statistic can also be plotted and compared with the asymptotic curve.

Home https://cran.r-project.org/web/packages/XNomial/index.html
Versions 1.0.4
License GPL-2|GPL-3
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-xnomial

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-xnomial

and update with:

conda update r-xnomial

docker

A Docker container is available at https://quay.io/repository/biocontainers/r-xnomial.