recipe scanindel

ScanIndel is a python program to detect indels (insertions and deletions) from NGS data by re-align and de novo assemble soft clipped reads.

Homepage

https://github.com/cauyrd/ScanIndel

License

GPL3 / GNU General Public License v3 or later (GPLv3+)

Recipe

/scanindel/meta.yaml

package scanindel

(downloads) docker_scanindel

Versions

1.3-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install scanindel

and update with:

conda update scanindel

or use the docker container:

docker pull quay.io/biocontainers/scanindel:<tag>

(see scanindel/tags for valid values for <tag>)