recipe scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

Homepage

https://scanpy.readthedocs.io/en/latest/

License

BSD-3

Recipe

/scanpy/meta.yaml

Links

doi: 10.1186/s13059-017-1382-0

package scanpy

(downloads) docker_scanpy

Versions

1.4.3-0, 1.4.2-0, 1.4.1-0, 1.4-0, 1.3.7-0, 1.3.6-0, 1.3.5-0, 1.3.4-0, 1.3.3-0, 1.3.2-0, 1.3.1-0

Depends anndata

>=0.6.10

Depends h5py

Depends louvain

Depends matplotlib

>=2.2

Depends natsort

Depends networkx

Depends numba

Depends pandas

>=0.21

Depends pytables

Depends python

>=3.6

Depends python-igraph

Depends scikit-learn

Depends scipy

<1.3

Depends seaborn

Depends setuptools

Depends statsmodels

Depends tqdm

Depends umap-learn

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install scanpy

and update with:

conda update scanpy

or use the docker container:

docker pull quay.io/biocontainers/scanpy:<tag>

(see scanpy/tags for valid values for <tag>)