recipe snakemake-minimal

Snakemake is a workflow management system that aims to reduce the complexity of creating workflows by providing a fast and comfortable execution environment, together with a clean and modern specification language in python style. Snakemake workflows are essentially Python scripts extended by declarative code to define rules. Rules describe how to create output files from input files. This package provides the core snakemake functionility. For features like reports and remote files, check out the snakemake package which provides all optional dependencies.







doi: 10.1093/bioinformatics/bts480, biotools: Snakemake

package snakemake-minimal

(downloads) docker_snakemake-minimal


5.5.0-0, 5.4.5-0, 5.4.4-1, 5.4.3-1, 5.4.3-0, 5.4.2-1, 5.4.2-0, 5.4.1-0, 5.4.0-0, 5.3.1-0, 5.3.0-2, 5.3.0-1, 5.3.0-0, 5.2.4-0, 5.2.2-1, 5.2.2-0, 5.2.1-0

Depends appdirs

Depends configargparse

Depends datrie

Depends docutils

Depends gitpython

Depends jsonschema

Depends psutil

Depends python


Depends pyyaml

Depends ratelimiter

Depends requests


Depends setuptools

Depends wrapt



With an activated Bioconda channel (see 2. Set up channels), install with:

conda install snakemake-minimal

and update with:

conda update snakemake-minimal

or use the docker container:

docker pull<tag>

(see snakemake-minimal/tags for valid values for <tag>)