stride

downloads

The StriDe Assembler integrates string and de Bruijn graph by decomposing reads within error-prone regions, while extending paire-end read into long reads for assembly through repetitive regions.

Home https://github.com/ythuang0522/StriDe
Versions 1.0
License GPL3
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/stride

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install stride

and update with:

conda update stride

docker

A Docker container is available at https://quay.io/repository/biocontainers/stride.