Tutorials¶

  • Adding bioinformatic software to Bioconda - a reference guide
    • TL;DR Relevant Commands
    • Prerequisites
    • Preparation
    • Writing the recipe
    • Writing a build script (optional)
    • Build testing
    • Opening the Pull Request
    • Test driving the docker Biocontainer (optional)
    • Finalising the PR
    • Conclusion
  • Updating bioinformatic software to Bioconda - a reference guide
    • Prerequisite
    • Updating the Bioconda recipe
    • Conclusion
  • Debugging a Bioconda build - a reference guide
    • Prerequisite
    • With conda-build
    • With bioconda-utils
    • It’s still not working!
    • Conclusion
  • GCB 2020 Tutorial
    • What exactly is Conda?
    • Conda packages
    • Conda channels
    • Finding Packages
    • Practical 1
    • Conda environments
    • Conda environments
    • Conda environments – common commands
    • Introducing mamba
    • Practical 2
    • Conda environments – common commands
    • Common pitfalls
    • Conda package recipes
    • meta.yaml sections
    • Don’t fear skeletons
    • Practical 3
    • Common problems
    • Practical 4 and/or Q&A

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    • Adding bioinformatic software to Bioconda - a reference guide
    • Updating bioinformatic software to Bioconda - a reference guide
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    • GCB 2020 Tutorial
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