recipe mess

Snakemake pipeline for simulating shotgun metagenomic samples

Homepage:

https://github.com/metagenlab/MeSS

Documentation:

https://metagenlab.github.io/MeSS

License:

MIT / MIT

Recipe:

/mess/meta.yaml

package mess

versions:

0.8.2-0,  0.8.0-0,  0.2.2-0,  v0.2.1-0

depends attrmap:

>=0.0.7

depends biopython:

>=1.83

depends pandas:

>=2.2.1

depends pulp:

<2.8

depends python:

>=3.10

depends pyyaml:

>=6.0.1

depends rich-click:

>=1.7.4

depends snakemake-minimal:

>=7.32.4

depends snaketool-utils:

>=0.0.5

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mess

and update with::

   mamba update mess

To create a new environment, run:

mamba create --name myenvname mess

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mess:<tag>

(see `mess/tags`_ for valid values for ``<tag>``)

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