:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'airr' .. highlight: bash airr ==== .. conda:recipe:: airr :replaces_section_title: :noindex: AIRR Community Data Representation Standard reference library for antibody and TCR sequencing data. Citations\: AIRR standards \. :homepage: http://docs.airr-community.org :license: CC / CC BY 4.0 :recipe: /`airr `_/`meta.yaml `_ .. conda:package:: airr |downloads_airr| |docker_airr| :versions: ``1.5.0-0``,  ``1.4.1-0``,  ``1.3.1-0``,  ``1.3.0-1``,  ``1.3.0-0``,  ``1.2.1-0`` :depends pandas: ``>=0.18.0`` :depends python: :depends pyyaml: ``>=3.12`` :depends yamlordereddictloader: ``>=0.4.0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install airr and update with:: mamba update airr To create a new environment, run:: mamba create --name myenvname airr with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/airr: (see `airr/tags`_ for valid values for ````) .. |downloads_airr| image:: https://img.shields.io/conda/dn/bioconda/airr.svg?style=flat :target: https://anaconda.org/bioconda/airr :alt: (downloads) .. |docker_airr| image:: https://quay.io/repository/biocontainers/airr/status :target: https://quay.io/repository/biocontainers/airr .. _`airr/tags`: https://quay.io/repository/biocontainers/airr?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/airr/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/airr/README.html