:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'akt' .. highlight: bash akt === .. conda:recipe:: akt :replaces_section_title: :noindex: Ancestry and Kinship Tools \(AKT\) :homepage: https://github.com/Illumina/akt :license: GPL3 :recipe: /`akt `_/`meta.yaml `_ :links: doi: :doi:`10.1093/bioinformatics/btw576` Ancestry and Kinship Tools \(AKT\) provides a handful of useful statistical genetics routines using the htslib API for input\/output. This means it can seamlessly read BCF\/VCF files and play nicely with bcftools. .. conda:package:: akt |downloads_akt| |docker_akt| :versions: .. raw:: html
0.3.3-40.3.3-30.3.3-20.3.3-10.3.3-00.3.2-40.3.2-30.3.2-20.3.2-1 ``0.3.3-4``,  ``0.3.3-3``,  ``0.3.3-2``,  ``0.3.3-1``,  ``0.3.3-0``,  ``0.3.2-4``,  ``0.3.2-3``,  ``0.3.2-2``,  ``0.3.2-1``,  ``0.3.2-0``,  ``0.2.0-0`` .. raw:: html
:depends _openmp_mutex: ``>=4.5`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install akt and update with:: mamba update akt To create a new environment, run:: mamba create --name myenvname akt with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/akt: (see `akt/tags`_ for valid values for ````) .. |downloads_akt| image:: https://img.shields.io/conda/dn/bioconda/akt.svg?style=flat :target: https://anaconda.org/bioconda/akt :alt: (downloads) .. |docker_akt| image:: https://quay.io/repository/biocontainers/akt/status :target: https://quay.io/repository/biocontainers/akt .. _`akt/tags`: https://quay.io/repository/biocontainers/akt?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/akt/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/akt/README.html