:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'aletsch' .. highlight: bash aletsch ======= .. conda:recipe:: aletsch :replaces_section_title: :noindex: Aletsch is an accurate\, versatile assembler for multiple RNA\-seq samples. :homepage: https://github.com/Shao-Group/aletsch :license: BSD-3-Clause :recipe: /`aletsch `_/`meta.yaml `_ .. conda:package:: aletsch |downloads_aletsch| |docker_aletsch| :versions: .. raw:: html
1.1.1-01.1.0-01.0.3-61.0.3-51.0.3-41.0.3-31.0.3-21.0.3-11.0.3-0 ``1.1.1-0``,  ``1.1.0-0``,  ``1.0.3-6``,  ``1.0.3-5``,  ``1.0.3-4``,  ``1.0.3-3``,  ``1.0.3-2``,  ``1.0.3-1``,  ``1.0.3-0``,  ``1.0.2-0``,  ``1.0.1-0`` .. raw:: html
:depends boost-cpp: ``>=1.78.0,<1.78.1.0a0`` :depends htslib: ``>=1.19.1,<1.20.0a0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install aletsch and update with:: mamba update aletsch To create a new environment, run:: mamba create --name myenvname aletsch with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/aletsch: (see `aletsch/tags`_ for valid values for ````) .. |downloads_aletsch| image:: https://img.shields.io/conda/dn/bioconda/aletsch.svg?style=flat :target: https://anaconda.org/bioconda/aletsch :alt: (downloads) .. |docker_aletsch| image:: https://quay.io/repository/biocontainers/aletsch/status :target: https://quay.io/repository/biocontainers/aletsch .. _`aletsch/tags`: https://quay.io/repository/biocontainers/aletsch?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/aletsch/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/aletsch/README.html