:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'alevin-fry' .. highlight: bash alevin-fry ========== .. conda:recipe:: alevin-fry :replaces_section_title: :noindex: alevin\-fry is a tool for the efficient processing of single\-cell data based on RAD files produced by alevin :homepage: https://github.com/COMBINE-lab/alevin-fry :license: BSD 3-Clause :recipe: /`alevin-fry `_/`meta.yaml `_ .. conda:package:: alevin-fry |downloads_alevin-fry| |docker_alevin-fry| :versions: .. raw:: html
0.9.0-00.8.2-00.8.1-20.8.1-10.8.1-00.8.0-00.7.0-10.7.0-00.6.0-2 ``0.9.0-0``,  ``0.8.2-0``,  ``0.8.1-2``,  ``0.8.1-1``,  ``0.8.1-0``,  ``0.8.0-0``,  ``0.7.0-1``,  ``0.7.0-0``,  ``0.6.0-2``,  ``0.6.0-1``,  ``0.6.0-0``,  ``0.5.1-0``,  ``0.5.0-1``,  ``0.5.0-0``,  ``0.4.3-0``,  ``0.4.2-0``,  ``0.4.1-0``,  ``0.4.0-0``,  ``0.3.0-0``,  ``0.2.0-0``,  ``0.1.0-1``,  ``0.1.0-0`` .. raw:: html
:depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install alevin-fry and update with:: mamba update alevin-fry To create a new environment, run:: mamba create --name myenvname alevin-fry with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/alevin-fry: (see `alevin-fry/tags`_ for valid values for ````) .. |downloads_alevin-fry| image:: https://img.shields.io/conda/dn/bioconda/alevin-fry.svg?style=flat :target: https://anaconda.org/bioconda/alevin-fry :alt: (downloads) .. |docker_alevin-fry| image:: https://quay.io/repository/biocontainers/alevin-fry/status :target: https://quay.io/repository/biocontainers/alevin-fry .. _`alevin-fry/tags`: https://quay.io/repository/biocontainers/alevin-fry?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/alevin-fry/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/alevin-fry/README.html